- Young-Rae Cho and Aidong Zhang.
"Predicting function by frequent functional association pattern mining in protein interaction networks".
IEEE Transactions on Information Technology in Biomedicine (TITB), 14(1):30-36, 2010.
- Lei Shi, Young-Rae Cho and Aidong Zhang.
"Prediction of protein function from connectivity of protein interaction networks".
International Journal of Computational Biology, To appear.
- Young-Rae Cho, Aidong Zhang and Xian Xu.
"Semantic similarity based feature extraction from microarray expression data".
International Journal of Data Mining and Bioinformatics (IJDMB), 3(3):333-345, 2009.
- Young-Rae Cho, Lei Shi and Aidong Zhang.
"Functional module detection by functional flow pattern minining in potein interaction networks".
BMC Bioinformatics, 9(Suppl 10):O1, 2008.
- Young-Rae Cho, Lei Shi, Murali Ramanathan and Aidong Zhang.
"A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge".
BMC Bioinformatics, 9:392, 2008.
- Woochang Hwang, Young-Rae Cho, Aidong Zhang and Murali Ramanathan.
"CASCADE: a novel quasi all path-based network analysis algorithm for clustering biological interactions".
BMC Bioinformatics, 9:64, 2008.
- Young-Rae Cho, Woochang Hwang, Murali Ramanathan and Aidong Zhang.
"Semantic integration to identify overlapping functional modules in protein interaction networks".
BMC Bioinformatics, 8:265, 2007.
- Woochang Hwang, Young-Rae Cho, Aidong Zhang and Murali Ramanathan.
"A novel functional module detection algorithm for protein-protein interaction networks".
Algorithms for Molecular Biology, 1:24, 2006.
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- Young-Rae Cho, Lei Shi and Aidong Zhang.
"flowNet: Flow-based approach for efficient analysis of complex biological networks".
IEEE International Conference on Data Mining (ICDM 2009), Miami, FL, December 6-9, 2009.
- Pritam Chanda, Young-Rae Cho, Aidong Zhang and Murali Ramanathan.
"Mining of attribute interactions using information theoretic metrics".
IEEE ICDM 2009 Workshop on Optimization Based Methods for Emerging Data Mining Problems, Miami, FL, December 6, 2009.
- Young-Rae Cho and Aidong Zhang.
"Restructuring protein interaction networks to reveal structural hubs and functional organizations".
IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2009), Washington DC, November 1-4, 2009.
- Lei Shi, Young-Rae Cho and Aidong Zhang.
"ANN based protein function prediction using integrated protein-protein interaction data".
International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing (IJCBS 2009), Shanghai, China, August 3-5, 2009.
- Young-Rae Cho and Aidong Zhang.
"Discovering frequent patterns of functional associations in protein interaction networks for function prediction".
IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2008), Philadelphia, PA, November 3-5, 2008.
- Young-Rae Cho, Xian Xu, Woochang Hwang and Aidong Zhang.
"Feature extraction from microarray expression data by integration of semantic knowledge".
6th International Conference on Machine Learning and Application (ICMLA 2007), Cincinnati, OH, December 13-15, 2007.
- Young-Rae Cho, Woochang Hwang and Aidong Zhang.
"Assessing reliability of protein-protein interactions by semantic data integration".
IEEE ICDM 2006 Workshop on Mining and Management of Biological Data (MMBD 2007), Omaha, NE, October 28-31, 2007.
- Young-Rae Cho, Woochang Hwang and Aidong Zhang.
"Optimizing flow-based modularization by iterative centroid search in protein interaction networks".
IEEE 7th International Conference on Bioinformatics and Bioengineering (BIBE 2007), Boston, MA, October 14-17, 2007.
- Woochang Hwang, Taehyong Kim, Young-Rae Cho, Aidong Zhang and Murali Ramanathan.
"SIGN: reliable protein interaction identification by integrating the similarity in GO and the similarity in protein interaction networks".
IEEE 7th International Conference on Bioinformatics and Bioengineering (BIBE 2007), Boston, MA, October 14-17, 2007.
- Young-Rae Cho, Woochang Hwang and Aidong Zhang.
"Modularization of protein interaction networks by incorporating Gene Ontology annotations".
IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2007), Honolulu, HI, April 1-5, 2007.
- Young-Rae Cho, Woochang Hwang and Aidong Zhang.
"Identification of overlapping functional modules in protein interaction networks: information flow-based approach".
IEEE ICDM 2006 Workshop on Data Mining in Bioinformatics (DMB 2006), Hong Kong, China, December 18, 2006.
- Young-Rae Cho, Woochang Hwang and Aidong Zhang.
"Efficient modularization of weighted protein interaction networks using k-hop graph reduction".
IEEE 6th Symposium on Bioinformatics and Bioengineering (BIBE 2006), Washington DC, October 16-18, 2006.
- Woochang Hwang, Young-Rae Cho, Aidong Zhang and Murali Ramanathan.
"Signal transduction model based functional module detection algorithm for protein-protein interaction networks".
6th SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2006), Philadelphia, PA, August 20, 2006.
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- Young-Rae Cho and Aidong Zhang.
"Integration of Gene Ontology into the Analysis of Protein Interaction Networks".
In Aidong Zhang, Protein Interaction Networks: Computational Approaches, Cambridge University Press.
- Chuan Lin, Young-Rae Cho, Woochang Hwang, Pengjun Pei and Aidong Zhang.
"Clustering Methods In Protein-Protein Interaction Network".
In Xiaohua Hu and Yi Pan (eds.), Knowledge Discovery in Bioinformatics: Techniques, Methods and Application, John Wiley & Sons Inc.
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